References

Last update:14 May, 2019

Stimfit has been used for data analysis in the following publications. If you miss a reference to your publication, please let us know here.

2018

• Rothman, J. S., & Silver, R. A. (2018). NeuroMatic: an integrated open-source software toolkit for acquisition, analysis and simulation of electrophysiological data. Frontiers in neuroinformatics, 12, 14.
• Parras, A., Anta, H., Santos-Galindo, M., Swarup, V., Elorza, A., Nieto-González, J. L., … & Rodolosse, A. (2018). Autism-like phenotype and risk gene mRNA deadenylation by CPEB4 mis-splicing. Nature, 560(7719), 441.
• Scheib, U., Broser, M., Constantin, O. M., Yang, S., Gao, S., Mukherjee, S., … & Hegemann, P. (2018). Rhodopsin-cyclases for photocontrol of cGMP/cAMP and 2.3 Å structure of the adenylyl cyclase domain. Nature communications, 9(1), 2046.
• Hu, H., Roth, F. C., Vandael, D., & Jonas, P. (2018). Complementary tuning of Na+ and K+ channel gating underlies fast and energy-efficient action potentials in GABAergic interneuron axons. Neuron, 98(1), 156-165.
• Marshall, J. J., Xu, J., & Contractor, A. (2018). Kainate receptors inhibit glutamate release via mobilization of endocannabinoids in striatal direct pathway spiny projection neurons. Journal of Neuroscience, 38(16), 3901-3910.
• Espinoza, C., Guzman, S. J., Zhang, X., & Jonas, P. (2018). Parvalbumin+ interneurons obey unique connectivity rules and establish a powerful lateral-inhibition microcircuit in dentate gyrus. Nature communications, 9(1), 4605.
• Rifkin, R. A., Huyghe, D., Li, X., Parakala, M., Aisenberg, E., Moss, S. J., & Slesinger, P. A. (2018). GIRK currents in VTA dopamine neurons control the sensitivity of mice to cocaine-induced locomotor sensitization. Proceedings of the National Academy of Sciences, 115(40), E9479-E9488.
• Grimm, C., Silapetere, A., Vogt, A., Sierra, Y. A. B., & Hegemann, P. (2018). Electrical properties, substrate specificity and optogenetic potential of the engineered light-driven sodium pump eKR2. Scientific reports, 8(1), 9316.
• Schulz, J. M., Knoflach, F., Hernandez, M. C., & Bischofberger, J. (2018). Dendrite-targeting interneurons control synaptic NMDA-receptor activation via nonlinear α5-GABA A receptors. Nature communications, 9(1), 3576.
• Booker, S. A., Domanski, A. P., Dando, O. R., Jackson, A. D., Isaac, J. T., Hardingham, G. E., … & Kind, P. C. (2018). Altered dendritic spine function and integration in a mouse model of Fragile X Syndrome. bioRxiv, 396986.
• Kim, S., Kim, Y., Lee, S. H., & Ho, W. K. (2018). Dendritic spikes in hippocampal granule cells are necessary for long-term potentiation at the perforant path synapse. eLife, 7, e35269.
• Ortega‐de San Luis, C., Sanchez‐Garcia, M. A., Nieto‐Gonzalez, J. L., García‐Junco‐Clemente, P., Montero‐Sanchez, A., Fernandez‐Chacon, R., & Pascual, A. (2018). Substantia nigra dopaminergic neurons and striatal interneurons are engaged in three parallel but interdependent postnatal neurotrophic circuits. Aging cell, 17(5), e12821.
• Turko, P., Groberman, K., Browa, F., Cobb, S., & Vida, I. (2018). Differential Dependence of GABAergic and Glutamatergic Neurons on Glia for the Establishment of Synaptic Transmission. Cerebral Cortex, 29(3), 1230-1243.

2017

• Chen C, Satterfield R, Young SM Jr, Jonas P (2017). Triple Function of Synaptotagmin 7 Ensures Efficiency of High-Frequency Transmission at Central GABAergic Synapses. Cell Rep 21:2082-2089.
• Christiansen GB Andersen KH, Riis S, Nykjaer A, Bolcho U, Jensen MS, Holm MM (2017). The sorting receptor SorCS3 is a stronger regulator of glutamate receptor functions compared to GABAergic mechanisms in the hippocampus. Hippocampus 27:235-248.
• Li L, Sultan S, Heigele S, Schmidt-Salzmann C, Toni N, Bischofberger J. (2017) Silent synapses generate sparse and orthogonal action potential firing in adult-born hippocampal granule cells. eLife 2017;6:e23612
• Schmidt-Hieber C, Toleikyte G, Aitchison L, Roth A, Clark BA, Branco T, Häusser M (2017). Active dendritic integration as a mechanism for robust and precise grid cell firing. Nat Neurosci 8:1114-1121
• Rueckl M, Lenzi SC, Moreno-Velasquez L, Parthier D, Schmitz D, Ruediger S, Johenning FW (2017). SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales. Front Neuroinform doi: 10.3389/fninf.2017.00044
• Saras A, Wu VV, Brawer HJ, Tanouye MA (2017). Investigation of Seizure-Susceptibility in a Drosophila melanogaster Model of Human Epilepsy with Optogenetic Stimulation. Genetics 206:1739-1746
• Batsikadze G, Paulus W, Hasan A, Grundey J, Kuo MF, Nitsche MA (2017). Compromised neuroplasticity in cigarette smokers under nicotine withdrawal is restituted by the nicotinic α4β2-receptor partial agonist varenicline. Sci Rep 7:1387
• Booker SA, Campbell GR, Mysiak KS, Brophy PJ, Kind PC, Mahad DJ, Wyllie DJ (2017). Loss of protohaem IX farnesyltransferase in mature dentate granule cells impairs short-term facilitation at mossy fibre to CA3 pyramidal cell synapses. J Physiol 195:2147-2160.
• Akbalik G, Langebeck-Jensen K, Tushev G, Sambandan S, Rinne J, Epstein I, Cajigas 1, Vlatkovic I, Schuman EM (2017). Visualization of newly synthesized neuronal RNA in vitro and in vivo using click-chemistry. RNA Biol. 14:20-28.
• Merel J, Shababo B, Naka A, Adesnik H, Paninski (2017). Bayesian methods for event analysis of intracellular currents. J Neurosci Methods 30:21-31.
• Cross KP, Britton S, Mangulins R, Money TG, Robertson RM (2017). Food deprivation and prior anoxic coma have opposite effects on the activity of a visual interneuron in the locust. J Inset Physiol 98:336-346.
• Gan J, Weng SM, Pernía-Andrade AJ, Csicsvari J, Jonas P (2017). Phase-Locked Inhibition, but Not Excitation, Underlies Hippocampal Ripple Oscillations in Awake Mice In Vivo. Neuron 10.1016/j.neuron.2016.12.018
• Sinclair JL, Fischl MJ, Alexandrova O, Heβ M, Grothe B, Leibold C, Kopp-Scheinpflug C (2017). Sound-Evoked Activity Influences Myelination of Brainstem Axons in the Trapezoid Body. J Neurosci 37 (34) 8239-8255.
• Sambandan S, Akbalik G, Kochen L, Rinne J, Kahlstatt J, Glock C, Tushev G, Alvarez-Castelao B, Heckel A, Schuman EM (2017). Activity-dependent spatially localized miRNA maturation in neuronal dendrites. Science, Feb 10; 355:634-637.
• Christiansen GB, Andersen KH, Riis S, Nykjaer A, Bolcho U, Jensen MS, Holm MM (2017). The sorting receptor SorCS3 is a stronger regulator of glutamate receptor functions compared to GABAergic mechanisms in the hippocampus. Hippocampus 10.1002/hipo.22689
• Sinclair JL, Barnes-Davies M, Kopp-Scheinpflug C, Forsythe ID (2017). Strain-specific differences in the development of neuronal excitability in the mouse ventral nucleus of the trapezoid body. Hear Res 18:28-37.

2016

• Vyleta NP, Borges-Merjane C, Jonas P (2016) Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. eLife 2016;5:e17977.
• Brunner J and Szabadics J (2016) Analogue modulation of back-propagating action potentials enables dendritic hybrid signalling. Nat Comm Oct 5;7:13033.
• Hanus C, Geptin H, Tushev G, Garg S, Alvarez-Castelao B, Sambandan S, Kochen L, Hafner AS, Langer JD, Schuman EM (2016) Unconventional secretory processing diversifies neuronal ion channel properties. eLife 2016;5:e20609.
• Engel D (2016) Subcellular Patch-clamp Recordings from the Somatodendritic Domain of Nigral Dopamine Neurons. J Vis Exp doi: 10.3791/54601
• Guzman SJ, Schlögl A, Frotscher M, Jonas P (2016) Synaptic mechanisms of pattern completion in the hippocampal CA3 network. Science, Sep 9; 353:1117-23.
• Iijima Y, Behr K, Iijima T, Biemans B, Bischofberger J, Scheiffele P (2016) Distinct Defects in Synaptic Differentiation of Neocortical Neurons in Response to Prenatal Valproate Exposure. Sci Rep 6:27400.
• Janz P, Savanthrapadian S, Haussler U, Kilias A, Nestel S, Kretz O, Kirsch M, Bartos M, Egert U, Haas CA (2016) Synaptic Remodeling of Entorhinal Input Contributes to an Aberrant Hippocampal Network in Temporal Lobe Epilepsy. Cerebral Cortex bhw093.
• Money TG, Sproule MK, Cross KP, Robertson RM (2016) Octopamine stabilizes conduction reliability of an unmyelinated axon during hypoxic stress. J Neurophysiol jn-00354.
• Cross KP, Robertson RM (2016) Ionic mechanisms maintaining action potential conduction velocity at high firing frequencies in an unmyelinated axon. Physiol Reports 4(10):e12814.
• Mishra RK, Kim S, Guzman SJ, Jonas P (2016) Symmetric spike timing-dependent plasticity at CA3-CA3 synapses optimizes storage and recall in autoassociative networks. Nat Comm May 13;7:11552.
• Merel J, Shababo B, Naka A, Adesnik H, Paninski L (2016) Bayesian methods for event analysis of intracellular currents. J Neurosci Methods 269:21-32.
• Booker SA, Althof D, Gross A, Loreth D, Müller J, Unger A, Fakler B, Varrao A, Watanabe M, Gassmann M, Bettler B, Shigemoto R, Vida I and Kulik A (2016) KCTD12 Auxiliary Proteins Modulate Kinetics of GABAB Receptor-Mediated Inhibition in Cholecystokinin-Containing Interneurons. Cereb Cortex pii:bhw090
• Heigele S, Sultan S, Toni N, Bischofberger J (2016) Bidirectional GABAergic control of action potential firing in newborn hippocampal granule cells. Nat Neurosci 19, 263-270.

2015

• Kroll JR, Wong KG, Siddiqui FM, Tanouye MA (2015). Disruption of Endocytosis with the Dynamin Mutant shibirets1 Suppresses Seizures in Drosophila. Genetics 201:1087-1102.
• Sultan S, Li L, Moss J, Petrelli F, Casse F, Gebara E, Lopatar J, Pfrieger FW, Bezzi P, Bischofberger J, Toni N (2015) Synaptic Integration of Adult-Born Hippocampal Neurons Is Locally Controlled by Astrocytes. Neuron 88(5):957-72.
• Kowalski J, Gan J, Jonas P, Pernía-Andrade AJ (2015) Intrinsic membrane properties determine hippocampal differential firing pattern in vivo in anesthetized rats. Hippocampus doi: 10.1002/hipo.22550.
• Scheib U, Stehest K, Gee CE, Körschen HG, Fudim R, Oertner TG, Hegemann P. (2015) The rhodopsin-guanylyl cyclase of the aquatic fungus Blastocladiella emersonii enables fast optical control of cGMP signaling. Sci Signal 2015 Aug 11;8(389):rs8. doi: 10.1126/scisignal.aab0611.
• Booker SA, Pires N, Cobb S, Soares-da-Silva P, Vida I (2015) Carbamazepine and oxcarbazepine, but not eslicarbazepine, enhance excitatory synaptic transmission onto hippocampal CA1 pyramidal cells through an antagonist action at adenosine A1 receptors. Neuropharmacology 93:103-15
• Chan V, Neal DM, Uzel SGM, Kim H, Bashir R, Asada HH (2015) Fabrication and characterization of optogenetic, multi-strip cardiac muscles. Lab Chip 15: 2258-2268
• Oettinghaus B, Schulz JM, Restelli LM, et al. (2015) Synaptic dysfunction, memory deficits and hippocampal atrophy due to ablation of mitochondrial fission in adult forebrain neurons. Cell Death Diff doi: 10.1038/cdd.2015.39
• Franzoni E, Booker SA, Parthasarathy S, et al. (2015) miR-128 regulates neuronal migration, outgrowth and intrinsic excitability via the intellectual disability gene Phf6. Polleux F, ed. eLife 2015:4;e04263.
• Degro CE, Kulik A, Booker SA, Vida I. (2015) Compartmental distribution of GABAB receptor-mediated currents along the somatodendritic axis of hippocampal principal cells. Front Synaptic Neurosci 7:6.
• Hönigsperger C, Marosi M, Murphy R, Storm JF. (2015) Dorsoventral differences in Kv7/M-current and its impact on resonance, temporal summation and excitability in rat hippocampal pyramidal cells. J Physiol 593(7): 1551-1580.
• You X, Vlatkovic I, Babic A, et al. (2015) Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity. Nat Neurosci doi:10.1038/nn.3975.
• Strüber M, Jonas P, Bartos M (2015) Strength and duration of perisomatic GABAergic inhibition depend on distance between synaptically connected cells. PNAS 112:1220-5

2014 and older

• Booker SA, Song J, Vida I (2014) Whole-cell Patch-clamp Recordings from Morphologically- and Neurochemically-identified Hippocampal Interneurons. J Vis Exp (91), e51706, doi:10.3791/51706
• Kim S (2014) Action Potential Modulation in CA1 Pyramidal Neuron Axons Facilitates OLM Interneuron Activation in Recurrent Inhibitory Microcircuits of Rat Hippocampus. PLoS One 9:e113124.
• Guzman SJ, Schlögl A, Schmidt-Hieber C (2014) Stimfit: quantifying electrophysiological data with Python. Front Neuroinform doi: 10.3389/fninf.2014.00016
• Savanthrapadian S, Meyer T, Elgueta C, Booker SA, Vida I, Bartos M (2014) Synaptic properties of SOM- and CCK-expressing cells in dentate gyrus interneuron networks. J Neurosci 24:8197-8209.
• Boudkkazi S, Brechet A, Schwenk J and Fakler B (2014). Cornichon2 dictates the time course of excitatory transmission at individual hippocampal synapes. Neuron, doi: http://dx.doi.org/10.1016/j.neuron.2014.03.031
• Hu H and Jonas P (2014). A supercritical density of Na+ channels ensures fast signaling in GABAergic interneuron axons. Nat Neurosci, doi:10.1038/nn.3678
• Vyleta NP and Jonas P (2014). Loose coupling between Ca2+ channels and release sensors at a plastic hippocampal synapse. Science, Feb 7; 343:665-70.
• Schmidt-Salzmann C, Li L, Bischofberger J (2013). Functional properties of extrasynaptic AMPA and NMDA receptors during postnatal hippocampal neurogenesis. J Physiol, doi: 10.1113/jphysiol.2013.267203
• Hosp JA, Strüber M, Yanagawa Y, Obata K, Vida I, Jonas P, Bartos M (2013). Morpho-physiological criteria divide dentate gyrus interneurons into classes. Hippocampus, doi: 10.1002/hipo.22214
• Schlögl A, Jonas P, Schmidt-Hieber C, Guzman SJ (2013). Stimfit: a fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering/Biomedizinische Technik.
• Rodriguez-Sierra OE, Turesson HK, Pare D (2013). Contrasting distribution of physiological cell types in different regions of the bed nucleus of the stria terminalis. J Neurophysiol August 7, 2013, doi: 10.1152/jn.00408.2013
• Booker SA, Gross A, Althof D, Shigemoto R, Bettler B, Frotscher M, Hearing M, Wickman K, Watanabe M, Kulik A, Vida I (2013). Differential GABAB-receptor-mediated effects in perisomatic- and dendrite-targeting parvalbumin interneurons. J Neurosci 33:7961-7974.
• Turesson HK, Rodriguez-Sierra OE, Pare D (2013). Intrinsic connections in the anterior part of the bed nucleus of the stria terminalis. J Neurophysiol February 27, 2013, doi: 10.1152/jn.00004.2013
• Schmidt-Hieber C, Häusser M (2013). Cellular mechanisms of spatial navigation in the medial entorhinal cortex. Nat Neurosci 16(3):325-331.
• Fuzik J, Gellért L, Oláh G, Herédi J, Kocsis K, Knapp L, Nagy D, Kincses ZT, Kis Z, Farkas T, Toldi J (2013). Fundamental interstrain differences in cortical activity between Wistar and Sprague-Dawley rats during global ischemia. Neuroscience 228:371-381.
• McLeod F, Ganley R, Williams L, Selfridge J, Bird A, Cobb SR (2013). Reduced seizure threshold and altered network oscillatory properties in a mouse model of Rett syndrome. Neuroscience 231:195-205.
• Ho EC, Strüber M, Bartos M, Zhang L, Skinner FK (2012). Inhibitory Networks of Fast-Spiking Interneurons Generate Slow Population Activities due to Excitatory Fluctuations and Network Multistability. J Neurosci 29:9931-9946.
• Kim S, Guzman SJ, Hu H, Jonas P (2012). Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons. Nat Neurosci 15(4):600-606.
• Eggermann E and Jonas P (2012). How the ‘slow’ Ca²⁺ buffer parvalbumin affects transmitter release in nanodomains-coupling regimes. Nat Neurosci 15(1):2022.
• Sauer JF, Strüber M, Bartos M (2012) Interneurons provide circuit-specific depolarization and hyperpolarization. J Neurosci 32(12):4224-4229.
• Poh YC, Beyder A, Strege PR, Farrugia G, Buist ML (2011). Quantification of gastrointestinal sodium channelopathy. J Theor Biol 293:41-48.
• Sambandan S, Sauer JF, Vida I, Bartos M (2010). Associative plasticity at excitatory synapses facilitates recruitment of fast-spiking interneurons in the dentate gyrus. J Neurosci 30:11826-11837.
• Pelkonen A, Hiltunen M, Kiianmaa K, Yavich L (2010). Stimulated dopamine overflow and alpha-synuclein expression in the nucleus accumbens core distinguish rats bred for differential ethanol preference. J Neurochem 114:1168-1176.
• Schmidt-Hieber C, Bischofberger J (2010). Fast sodium channel gating supports localized and efficient axonal action potential initiation. J Neurosci 30(30):10233-10242.
• Guzman SJ, Schmidt H, Franke H, Krügel U, Eilers J, Illes P, Gerevich Z (2010). P2Y₁ receptors inhibit long-term depression in the prefrontal cortex. Neuropharmacology 59(6):406-415.
• Seutin V, Engel D (2010) Differences in Na⁺ Conductance Density and Na⁺ Channel Functional Properties Between Dopamine and GABA Neurons of the Rat Substantia Nigra. J Neurophysiol 103:3099-3114.
• Kowalski J, Geuting M, Paul S, Dieni S, Laurens J, Zhao S, Drakew A, Haas CA, Frotscher M, Vida I (2010). Proper Layering Is Important for Precisely Timed Activation of Hippocampal Mossy Cells. Cereb Cortex. 20(9):2043-2054.
• Sauer JF, Bartos M (2010). Recruitment of early postnatal parvalbumin-positive hippocampal interneurons by GABAergic excitation. J Neurosci. 30(1):110-5.
• Babu H, Ramirez-Rodriguez, Fabel K, Bischofberger J, Kempermann G (2009). Synaptic network activity induces neuronal differentiation of adult hippocampal precursor cells through BDNF signaling. Front. Neurogenesis 30:3-49.
• Doischer D, Hosp JA, Yanagawa Y, Obata K, Jonas P, Vida I, Bartos M (2008). Postnatal differentiation of basket cells from slow to fast signaling devices. J Neurosci. 28(48):12956-68.
• Stocca G, Schmidt-Hieber C, Bischofberger J (2008). Differential dendritic Ca²⁺ signalling in young and mature hippocampal granule cells. J Physiol. 586(16):3795-811.
• Schmidt-Hieber C, Jonas P, Bischofberger J (2008). Action potential initiation and propagation in hippocampal mossy fibre axons. J Physiol. 586(7):1849-57.
• Li L, Bischofberger J, Jonas P (2007). Differential gating and recruitment of P/Q-, N-, and R-type Ca²⁺ channels in hippocampal mossy fiber boutons. J Neurosci. 27(49):13420-9.
• Schmidt-Hieber C, Jonas P, Bischofberger J (2007). Subthreshold dendritic signal processing and coincidence detection in dentate gyrus granule cells. J Neurosci. 27(31):8430-41.
• Hefft S, Jonas P (2005). Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse. Nat Neurosci. 8(10):1319-28.
• Schmidt-Hieber C, Jonas P, Bischofberger J (2004). Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus. Nature. 2004 May 13;429(6988):184-7.